RISE is a comprehensive repository of RNA-RNA interactions. The interactions mainly come from recent transcriptome-wide sequencing-based experiments like PARIS, SPLASH, LIGRseq, and MARIO, and targeted studies like RIAseq, RAP-RNA, and CLASH. RISE also includes interactions aggregated from other (primary) databases and publications.
The RISE database currently contains 328,811 RNA-RNA interactions mainly in three species. It features 292,850 interactions involving messenger and long non-coding RNAs.